Package: bedrockbio 2.0.0

Liam Abbott

bedrockbio: Open-Access Computational Biology Datasets

Efficiently access the 'Bedrock Bio' library of open-access computational biology datasets. Lazily query datasets backed by 'DuckDB' and 'Apache Iceberg', with support for predicate pushdown and column projection to the cloud storage backend. This enables quick, iterative access to otherwise massive, unwieldy datasets without downloading them in full. See <https://bedrock.bio> for available datasets and documentation.

Authors:Liam Abbott [aut, cre, cph]

bedrockbio_2.0.0.tar.gz
bedrockbio_2.0.0.tgz(r-4.6-any)bedrockbio_2.0.0.tgz(r-4.5-any)
bedrockbio_2.0.0.tar.gz(r-4.7-any)bedrockbio_2.0.0.tar.gz(r-4.6-any)
bedrockbio_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bedrockbio/json (API)

# Install 'bedrockbio' in R:
install.packages('bedrockbio', repos = c('https://staging.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bedrock-bio/bedrock-bio-client/issues

On CRAN:

Conda:

3.62 score 1 stars 12 scripts 146 downloads 5 exports 26 dependencies

Last updated from:5b2e436280 (on v2.0.0). Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develOK670
source / vignettesOK175
linux-releaseOK196
macos-releaseOK95
macos-oldrelOK100
windows-develOK905
windows-releaseOK43
windows-oldrelOK48
wasm-releaseOK109

Exports:describe_namespacedescribe_tablelist_namespaceslist_tablesload_table

Dependencies:blobclicpp11curlDBIdbplyrdplyrduckdbgenericsgluejsonlitelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr