Package: ecoXCorr 0.2.2

Nicolas Moiroux

ecoXCorr: Lagged Cross-Correlation Analysis of Environmental Time Series

Tools for analysing lagged relationships between environmental variables and ecological or epidemiological time series. The package implements a workflow to aggregate meteorological data over multiple lagged intervals, fit regression models, including mixed-effect models using 'glmmTMB', for each lag window, and visualise varied models outcomes (effect strength and direction, model prediction error...) using cross-correlation maps ('CCM').

Authors:Nicolas Moiroux [aut, cre], Colombine Bartholomée [aut], Paul Taconet [aut]

ecoXCorr_0.2.2.tar.gz
ecoXCorr_0.1.8.zip(r-4.7)ecoXCorr_0.2.1.zip(r-4.6)ecoXCorr_0.2.2.zip(r-4.5)
ecoXCorr_0.2.1.tgz(r-4.6-any)ecoXCorr_0.2.2.tgz(r-4.5-any)
ecoXCorr_0.2.2.tar.gz(r-4.6-any)
ecoXCorr_0.2.2.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ecoXCorr/json (API)
NEWS

# Install 'ecoXCorr' in R:

install.packages('ecoXCorr', repos = c('https://staging.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nmoiroux/ecoxcorr/issues

Datasets:

albopictusMPL2023 - Entomological records of female *Aedes albopictus* in Montpellier
meteoMPL2023 - Daily meteorological conditions in Montpellier

On CRAN:

3.65 score 1 stars 595 downloads 5 exports 90 dependencies

Last updated from:0936697d86 (on v0.2.2). Checks:5 FAIL, 4 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	FAIL	658
source / vignettes	OK	522
linux-release-x86_64	FAIL	214
macos-release-arm64	FAIL	123
macos-oldrel-arm64	OK	112
windows-devel	FAIL	943
windows-release	FAIL	920
windows-oldrel	OK	129
wasm-release	OK	160

Exports:aggregate_lagged_intervals ecoXCorr ecoXCorrApp fit_models_by_lag plotCCM

Dependencies:backports base64enc bayestestR boot broom bslib cachem cli colorspace commonmark cowplot cpp11 datawizard Deriv digest doBy dplyr farver fastmap fontawesome forecast fracdiff fs generics ggplot2 glmmTMB glue gtable htmltools httpuv insight isoband jquerylib jsonlite labeling later lattice lifecycle lme4 lmtest magrittr MASS Matrix memoise mgcv microbenchmark mime minqa modelr nlme nloptr nnet numDeriv otel pbkrtest performance pillar pkgconfig promises purrr R6 rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack reformulas rlang S7 sandwich sass scales shiny sourcetools stringi stringr tibble tidyr tidyselect timeDate TMB urca utf8 vctrs viridisLite withr xtable zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Aggregate meteorological time series over multiple lagged time intervals	aggregate_lagged_intervals
Entomological records of female Aedes albopictus in Montpellier (2023)	albopictusMPL2023
Run a complete ecoXCorr analysis: aggregation + lagged modelling	ecoXCorr
Launch the ecoXCorr Shiny application	ecoXCorrApp
Fit regression models by lag window on aggregated meteorological predictors	fit_models_by_lag
Daily meteorological conditions in Montpellier (2023)	meteoMPL2023
Plot a cross-correlation map (CCM) from lagged regression results	plotCCM