Package: ecoXCorr 0.1.0

Nicolas Moiroux

ecoXCorr: Lagged Cross-Correlation Analysis of Environmental Time Series

Tools for analysing lagged relationships between environmental variables and ecological or epidemiological time series. The package implements a workflow to aggregate meteorological data over multiple lagged intervals, fit regression models for each lag window, and visualise effect strength and direction using cross-correlation maps (CCM).

Authors:Nicolas Moiroux [aut, cre], Colombine Bartholomée [aut], Paul Taconet [aut]

ecoXCorr_0.1.0.tar.gz
ecoXCorr_0.1.0.zip(r-4.6)ecoXCorr_0.1.0.zip(r-4.5)ecoXCorr_0.1.0.zip(r-4.4)
ecoXCorr_0.1.0.tgz(r-4.6-any)ecoXCorr_0.1.0.tgz(r-4.5-any)
ecoXCorr_0.1.0.tar.gz(r-4.6-any)ecoXCorr_0.1.0.tar.gz(r-4.5-any)
ecoXCorr_0.1.0.tgz(r-4.5-emscripten)
ecoXCorr.pdf |ecoXCorr.html✨
ecoXCorr/json (API)

# Install 'ecoXCorr' in R:

install.packages('ecoXCorr', repos = c('https://staging.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/nmoiroux/ecoxcorr/issues

Datasets:

albopictusMPL2023 - Entomological records of female *Aedes albopictus* in Montpellier
meteoMPL2023 - Daily meteorological conditions in Montpellier

On CRAN:

1.70 score 3 exports 75 dependencies

Last updated from:f12e78a6c9 (on v0.1.0). Checks:7 NOTE, 2 OK. Indexed: no.

Target	Result	Total time
linux-devel-x86_64	NOTE	727
source / vignettes	OK	220
linux-release-x86_64	NOTE	156
macos-devel-arm64	NOTE	117
macos-release-arm64	NOTE	109
windows-devel	NOTE	1120
windows-release	NOTE	114
windows-oldrel	NOTE	175
wasm-release	OK	139

Exports:aggregate_lagged_intervals fit_models_by_lag plotCCM

Dependencies:backports bayestestR boot broom cli colorspace cowplot cpp11 curl datawizard Deriv doBy dplyr farver forecast fracdiff generics ggplot2 glmmTMB glue gtable insight isoband jsonlite labeling lattice lifecycle lme4 lmtest magrittr MASS Matrix mgcv microbenchmark minqa modelr nlme nloptr nnet numDeriv pbkrtest performance pillar pkgconfig purrr quadprog quantmod R6 rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack reformulas rlang S7 sandwich scales stringi stringr tibble tidyr tidyselect timeDate TMB tseries TTR urca utf8 vctrs viridisLite withr xts zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Aggregate meteorological time series over multiple lagged time intervals	aggregate_lagged_intervals
Entomological records of female Aedes albopictus in Montpellier (2023)	albopictusMPL2023
Fit regression models by lag window on aggregated meteorological predictors	fit_models_by_lag
Daily meteorological conditions in Montpellier (2023)	meteoMPL2023
Plot a cross-correlation map (CCM) from lagged regression results	plotCCM