Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.6)webseq_0.1.zip(r-4.5)
webseq_0.1.tgz(r-4.6-any)webseq_0.1.tgz(r-4.5-any)
webseq_0.1.tar.gz(r-4.6-any)
webseq_0.1.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://staging.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

Conda:

3.18 score 3 stars 1 scripts 14 exports 32 dependencies

Last updated from:b710f93da5 (on v0.1.0). Checks:6 FAIL, 1 OK, 2 WARNING. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64FAIL469
source / vignettesOK246
linux-release-x86_64FAIL159
macos-release-arm64FAIL100
macos-oldrel-arm64WARNING193
windows-develFAIL804
windows-releaseFAIL194
windows-oldrelWARNING184
wasm-releaseFAIL134

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon May 19 2026.

Last update: 2023-12-10
Started: 2023-08-23