Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.6)webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)
webseq_0.1.tgz(r-4.5-any)webseq_0.1.tgz(r-4.4-any)
webseq_0.1.tar.gz(r-4.6-any)webseq_0.1.tar.gz(r-4.5-any)
webseq_0.1.tgz(r-4.5-emscripten)webseq_0.1.tgz(r-4.4-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://staging.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

Conda:

3.18 score 3 stars 1 scripts 14 exports 32 dependencies

Last updated 1 years ago from:b710f93da5 (on v0.1.0). Checks:7 WARNING, 3 OK. Indexed: no.

TargetResultTotal time
linux-devel-x86_64WARNING230
source / vignettesOK188
linux-release-x86_64WARNING182
macos-release-arm64WARNING137
macos-oldrel-arm64WARNING168
windows-develWARNING187
windows-releaseWARNING155
windows-oldrelWARNING188
wasm-releaseOK118
wasm-oldrelOK103

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Jun 23 2025.

Last update: 2023-12-10
Started: 2023-08-23