Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.6)webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)
webseq_0.1.tgz(r-4.5-any)webseq_0.1.tgz(r-4.4-any)
webseq_0.1.tar.gz(r-4.6-any)webseq_0.1.tar.gz(r-4.5-any)
webseq_0.1.tgz(r-4.4-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://staging.r-multiverse.org', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

Conda:

3.18 score 3 stars 1 scripts 14 exports 33 dependencies

Last updated 1 years agofrom:b710f93da5 (on v0.1.0). Checks:3 OK, 7 WARNING. Indexed: no.

TargetResultTotal time
source / vignettesOK181
linux-develWARNING571
linux-releaseWARNING192
macos-release-arm64WARNING179
macos-oldrel-arm64WARNING166
windows-develWARNING909
windows-releaseWARNING165
windows-oldrelWARNING167
wasm-releaseOK112
wasm-oldrelOK149

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Apr 27 2025.

Last update: 2023-12-10
Started: 2023-08-23